Top 5 best software in world

By | August 1, 2021

Software articles should describe a tool with broad utility that represents a significant advancement over previously published software (usually demonstrated by direct comparison with available related software).

Software availability for reviewers and other researchers
The software applications/tools described in the manuscript should be available for review by reviewers in a way that maintains their anonymity. If published, the software applications/tools should be freely available to any researcher who wishes to use them for non-commercial purposes, without any restrictions, such as the requirement of a Content Transfer Agreement. Since weblinks are frequently broken, BMC Bioinformatics strongly recommends that all software applications/tools be included as additional files with the submitted manuscript to ensure that the software remains available.

BMC Bioinformatics recommends, but does not require, that the source code of the software be made available under an appropriate open-source license, which would give other researchers the right to further develop and extend the software if they wish to do so. . Typically, a collection of source code for the current version of the software should be included with the submitted manuscript as a supplemental file. Since it is likely that the software will continue to be developed after publication, the manuscript should also include a link to the home page for the software project. For open source projects, we recommend that authors host their projects with a recognized open-source repository such as bioinformatics.org or sourceforge.net.

Should a website description be submitted as a software article or a database article?
Descriptions of websites and web-based tools must be presented as software articles if the intention is that the software running the website will be made available for other researchers to expand and use on other websites. On the other hand, if the functionality of a website is closely tied to a specific database then the article should be presented as a database article.

prepare your manuscript

The information below details the section headings you should include in your manuscript and what information each section should contain.

Please note that your manuscript must include a ‘Declaration’ section including all subtitles (please see below for more details).

title page

Title page needed:

Submit a title that includes, if appropriate, the study design, such as:

“A versus B in the treatment of C: a randomized controlled trial”, “Is X a risk factor for Y: a case control study”, “What is the effect of factor X on subject Y: a systematic review”

or for non-clinical or non-research studies: description of what the article reports

List full names and institutional addresses for all authors

If a collaboration group must be listed as an author, please list the group’s name as an author. If you would like the names of individual group members to be searched through their individual PubMed records, please include this information in the “Acknowledgments” section as directed below.

Indicate the corresponding author

Summary

The abstract should not exceed 350 words. Please minimize the use of abbreviations and do not cite references in the abstract. The abstract should include the following separate sections:

Background: Context and Objectives of the Study

Result: Main Conclusion

Conclusion: A Brief Summary and Possible Effects

keywords

Three to ten keywords representing the main content of the article.

background

The Background section should explain the relevant context and the specific problem that the described software is intended to solve.

implementation

This should include a description of the overall architecture of the software implementation, along with a description of any significant issues and how they were addressed.

Result

It should include the findings of the study and, if appropriate, the results of statistical analysis, which should be included in the text or in the form of tables and figures. This section can be combined with the discussion section for software articles.

discussion (if appropriate)

The user interface should be described and a discussion of the intended uses of the software, and the benefits envisioned, should be made with data regarding comparison and improvement of its performance and functionality over functionally similar existing software. should be included with. A case study of the use of the software can be presented. Planned future development of new facilities, if any, should be mentioned.

Conclusion

It should clearly state the main findings and provide an explanation of the importance and relevance of the reported case, data, opinion, database or software.

Availability and requirements

Lists the following:

Project Name: eg. my bioinformatics project
Project home page: eg. http://sourceforge.net/projects/mged
Operating System: eg. platform independent
Programming language: eg. Java
Other requirements: eg. Java 1.3.1 or higher, Tomcat 4.0 or higher
License: eg. GNU GPL, FreeBSD etc.
All restrictions used by non-academics: eg. license needed

List of Abbreviations

If abbreviations are used in the text, they should be defined in the first use in the text, and a list of abbreviations should be provided.

Announcements

All manuscripts should have the following sections under the heading ‘Declarations’:

Ethics approval and consent to participate

consent to publication

Availability of data and content

competing interests

Grant

Contribution of authors

approvals

Author info (optional)

Please see below for details on the information to be included in these sections.

If a section is not relevant to your manuscript, please include the title and write ‘NOT APPLICABLE’ for that section.

Ethics approval and consent to participate

Manuscripts reporting studies involving human participants, human data or human tissue:

Include a statement on ethics approval and consent (even where the approval requirement was waived)

Include the name of the ethics committee that approved the study and, if appropriate, the committee’s reference number

Studies involving animals must include a statement on ethics approval and for experimental studies involving client-owned animals, authors must also include a statement on informed consent from the client or owner.

See our editorial policies for more information.

If your manuscript does not report or contain the use of any animal or human data or tissue, please state “Not Applicable” in this section.

consent to publication

If your manuscript contains any person’s data in any form (including any personal details, images or videos), consent for publication has been obtained from that person, or in the case of children, their parent or legal guardian Should be known All presentations of the case report must have consent for publication.

You may choose to use your Institutional Consent Form or our Consent Form. You should not send the form to us upon submission, but we may request a copy to be viewed at any stage (including after publication).

See our editorial policies for more information on consent to publication.

If your manuscript does not contain data for an individual, please write “NOT APPLICABLE” in this section.

Availability of data and content

All manuscripts must include a ‘data and material availability’ statement. Data availability statements should include information about where the data supporting the results reported in the article can be found, where applicable, hyperlinks to publicly stored datasets analyzed or generated during the study. By data, we mean the minimum dataset that would be required to interpret, replicate and build upon the findings reported in the article. We recognize that it is not always possible to publicly share research data, for example when individual privacy may be compromised, and in such cases data availability is still subject to any condition for access to the manuscript. should be told.

Data availability statements can take one of the following forms (or a combination of more than one if required for multiple datasets):

The datasets generated and/or analyzed during the current study are available in the [NAME] repository, [permanent web link for datasets]

The datasets used and/or analyzed during the current study are available from the corresponding author upon reasonable request.

All data generated or analyzed during this study are included in this published article [and its Supplementary Information files.

The datasets generated and/or analyzed during the current study are not publicly available [reasons why the data are not public] but are available from the corresponding author upon reasonable request.

Data sharing is not applicable to this article as no datasets were generated or analyzed during the current study.

Data supporting the findings of this study are available from [third party names] but restrictions apply to the availability of these data, which were used under license for the current study, and therefore not publicly available Huh. The data are however available upon reasonable request from the authors and with the permission of [third party names].

Not Applicable. If your manuscript does not contain any data, please write ‘NOT APPLICABLE’ in this section.

More examples of template data availability details, including examples of openly available and restricted access datasets, are available here.

BioMed Central also requires that authors cite any publicly available data on which the paper’s findings rely in the manuscript. Data citations should include a permanent identifier (such as a DOI) and ideally be included in the reference list. Citations of datasets, when they appear in the bibliography, must include the minimum amount of information recommended by the dataset and follow the journal style. Dataset identifiers, including DOIs, must be expressed as absolute URLs.

Availability of data and material description with corresponding text in:

The datasets generated and/or analyzed during the current study are available in the [NAME] repository, [Persistent Web Link to Datasets]. [reference number]

If you would like to co-submit a data note describing your data to be published in BMC Research Notes, you may do so by visiting our submission portal. Data Notes supports open data and helps authors adhere to funder policies on data sharing. Co-published data notes will be attached to the research article supporting the data (examples).

competing interests

All financial and non-financial competing interests must be declared in this section.

See our editorial policies for a full description of competing interests. If you are not sure whether you or any of your co-authors have a competing interest, please contact the editorial office.

Please use the authors’ initials to refer to each author’s competing interests in this section.

If you have no competing interests, please state “The authors declare that they have no competing interests” in this section.

Grant

All sources of funding for the reported research must be declared. The role of the funding body in study design and collection, analysis, and interpretation of data and writing the manuscript should be declared.

Contribution of authors

Individual contributions of the authors to the manuscript must be specified in this section. Guidance and criteria for authorship can be found in our editorial policies.

Please use initials to refer to each author’s contribution in this section, for example: “FC analyzed and interpreted patient data in relation to hematological disease and transplantation. RH performed histological examination of the kidney, and the manuscript was a major contributor to the writing… All authors have read and approved the finished handwriting.”

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